Egghead is a blog about research by, with or related to UC Davis. Comments on posts are welcome, as are tips and suggestions for posts. General feedback may be sent to Andy Fell. This blog is created and maintained by UC Davis University Communications, and mostly edited by Andy Fell.
We’re adding a new element to the Egghead blog this month with Three Minute Egghead, a podcast about research at UC Davis. While we figure out a few details about RSS feeds and XML, I’ll be posting these audio files to the Egghead blog, usually with an accompanying blog post.
Our first piece is about two UC Davis computer scientists who are using data from the open-source programming website GitHub to learn about coder’s work habits and in particular, how multitasking affects productivity.
Study author Bogdan Vasilescu will be presenting the study at the International Conference on Software Engineering in Austin, Texas tomorrow, May 20.
Today’s White House announcement of the National Microbiome Initiative will bring new funding and attention to better understand the billions of microbes that swarm around in and around us and probably play an important role in our health, food and environment. At UC Davis, many scientists are already exploring this hidden world. Here are a few of them.
Jonathan Eisen is one of the pioneers of studying microbe communities through genetic sequencing. His lab is involved in understanding the complete “Tree of Life,” and projects on microbial communities associated with buildings, as well as communities on different plants and animals, including people, dogs and cats. A prolific blogger, Eisen regularly calls out examples of excessive microbiome hype.
By Carole Gan
Antibiotics are essential for fighting bacterial infection, but they can also make the body more prone to infection and diarrhea. Exactly how do antibiotics foster growth of disease-causing microbes – and how can resident “good” microbes in the gut protect against pathogens, such as Salmonella?
Now research led by Andreas Bäumler, professor of medical immunology and microbiology at UC Davis Health System, has identified the chain of events that occur within the gut lumen of mice after antibiotic treatment that allow “bad” bugs to flourish.
By Pat Bailey
The curtain cloaking how AIDS and HIV (human immunodeficiency virus) impact the human digestive and immune systems has been drawn back a bit further, thanks to a team of researchers from UC Davis’ departments of Food Science and Technology and Medical Microbiology and Immunology.
The small intestine is extremely difficult to study because of its location in the body but plays a critical role in human health. Its inner lining offers both a portal for absorbing nutrients and a barrier against toxins or invasive microbes.
Holstein cows eat lunch at the Dairy Cattle Facility at UC Davis. Credit: Gregory Urquiaga, UC Davis
By Frank Mitloehner
As the November 2015 Global Climate Change Conference COP21 concluded in Paris, 196 countries reached agreement on the reduction of fossil fuel use and emissions in the production and consumption of energy, even to the extent of potentially phasing out fossil fuels out entirely.
Both globally and in the U.S., energy production and use, as well as the transportation sectors, are the largest anthropogenic contributors of greenhouse gasses (GHG), which are believed to drive climate change. While there is scientific consensus regarding the relative importance of fossil fuel use, anti animal-agriculture advocates portray the idea that livestock is to blame for a lion’s share of the contributions to total GHG emissions.
Update May 4: This event is now free of charge for all. RSVPs are requested.
By Becky Oskin
The first lecture in new Winston Ko Frontiers in Mathematical and Physical Sciences Public Lecture series will take place May 9. Veronika Hubeny will discuss modern understanding of black holes, and the remaining mysteries. Her talk, “Illuminating Black Holes,” begins at 5 p.m. on Monday, May 9, in the UC Davis Conference Center.
By Kat Kerlin
Global carbon dioxide emissions are triggering permanent changes to ocean chemistry along the West Coast. Failure to act on this fundamental change in seawater chemistry, known as ocean acidification, is expected to have devastating ecological consequences for the West Coast in the decades to come, warns a multistate panel of scientists, including two from UC Davis Bodega Marine Laboratory.
Their report, issued this week, urges immediate action and outlines a regional strategy to combat the alarming global changes underway. Inaction now will reduce options and impose higher costs later, the report said.
By Carole Gan
Researchers at UC Davis have discovered an unexpected link between how the immune system sounds an alarm when its cells are taken over by pathogens during an infection and how an inflammatory response is triggered.
The finding of this novel link, published in the journal Nature on March 23, is important because it helps researchers understand how a cell senses bacterial or viral infection, and how these pathways are linked to inflammatory diseases, such as inflammatory bowel disease, diabetes and atherosclerosis.
Our electronic devices are based on what happens when different materials are layered together: “The interface is the device,” as Nobel laureate Herbert Kroemer famously claimed over 40 years ago. Right now, our microchips and memory devices are based on the movement of electrons across and near interfaces, usually of silicon, but with limitations of conventional electronics become apparent, researchers are looking at new ways to store or process information. These “heterostructures” can also find applications in advanced batteries and fuel cells.
Now physicists at UC Davis have observed what’s going on at some of these interfaces as oxygen ions react with different metals, causing drastic changes in magnetic and electronic properties.
By Becky Oskin
Beloved by beach goers, tide pools are also important ecological zones that provide shelter and food for many plants and animals.
Marine life living in tide pools are vulnerable to rising acid levels in seawater, according to new research from UC Davis, the Carnegie Institution for Science and UC Santa Cruz published March 18 in the journal Scientific Reports.