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Egghead is a blog about research by, with or related to UC Davis. Comments on posts are welcome, as are tips and suggestions for posts. General feedback may be sent to Andy Fell. This blog is created and maintained by UC Davis University Communications, and mostly edited by Andy Fell.

Act now to avoid irreversible climate tipping point, scientists urge

By Kat Kerlin

Five UC Davis faculty members joined more than 500 top global change scientists in signing a statement that outlines the key environmental issues – from climate change to pollution and population growth — policymakers must address to avoid an approaching global tipping point.

The statement, released today, is a response to a challenge by California Gov. Jerry Brown for scientists to translate their findings into terms policymakers, industry and the general public can understand and begin to address.

The five UC Davis signatories include: parasitology professor Patricia Conrad, environmental science and policy professor Alan Hastings, oceanography professor John Largier, geology professor Geerat Vermeij, and evolution and ecology professor Susan Williams.

Video: UC Davis palaeontologist Geerat Vermeij talks about the “tipping point.”

The leaders of the initiative, spearheaded by UC Berkeley and Stanford University, plan to join Gov. Brown today to release the 30-page statement, “Maintaining Humanity’s Life Support Systems in the 21st Century,” during the 2013 Water, Energy and Smart Technology Summit and Showcase, held at NASA Ames Research Center in Mountain View, Calif.

UC Berkeley professor Anthony Barnosky was the statement’s lead writer. Hastings and Vermeij, co-authored a study led by Barnosky about Earth’s tipping point, published June 7, 2012 in Nature. That study called for global cooperation to reduce world population growth and per-capita resource use, replace fossil fuels with sustainable sources, develop more efficient food production and distribution systems, and better protect land and ocean areas not already dominated by humans. Such themes were echoed in today’s consensus statement.

“Meeting the challenges of climate change will require real action based on scientifically sound principles, both right now and for the foreseeable future,” said Hastings. “This call to action by leading scientists should help to serve as a wake-up call and should spur both action by policymakers and further efforts by scientists to develop plans for action.”

The scientists identify five key threats:

  1. Climate change.
  2. High rates of extinction for both animals and plants.
  3. The loss of ecosystems around the planet as they are paved over, plowed or tamed.
  4. Human population growth.
  5. Pollution.

The full text of the statement and a list of the 520 signatories — they hail from 44 countries and include two Nobel laureates, 33 members of the U.S. National Academy of Sciences and members of other nation’s scientific academies — will be on the website of the Millennium Alliance for Humanity and the Biosphere, where it will be available for signing by other scientists and the general public.

The statement does not recommend specific strategies but pinpoints the major issues that need to be addressed. Among the recommendations are:

  • Decrease greenhouse gas emissions and plan now to adapt to the consequences of climate change already underway. To achieve this, replace fossil fuels with carbon-neutral energy sources, such as solar, wind and biofuels; promote energy-efficient buildings, transportation and manufacturing systems; conserve forests and regulate land conversion to maximize carbon sequestration; and develop plans to deal with climatic impacts such as rising sea levels and shifting patterns of agricultural productivity.
  • Slow the global loss of biodiversity by recognizing the long-term economic benefits and intangible gains that come from protecting natural ecosystems from ocean acidification, overfishing, forest conversion and other pressures.
  • Curb the manufacture and release of toxic substances into the environment with regulations on existing and new chemicals. Bolster research to develop safer alternatives.
  • Slow land conversion by improving the efficiency of food production in existing agricultural areas and better food distribution while decreasing waste. Encourage urban growth rather than suburban sprawl.
  • Slow and eventually stop world population growth, with a peak of no more than 9 billion, decreasing to less than 7 billion by 2100. Do this by ensuring access to education, economic opportunities and health care, including family planning services, with a special focus on women’s rights. Promote environmentally friendly changes in consumer behavior.

“As members of the scientific community actively involved in assessing the biological and societal impacts of global change, we are sounding this alarm to the world,” the scientists write in the summary. “for humanity’s continued health and prosperity, we all – individuals, businesses, political leaders, religious leaders, scientists and people in every walk of life – must work hard to solve these five global problems, starting today.”

UC Davis to offer summer internships in physics, math to students from Mexico

Undergraduate math and physics students from Mexico will be able to take up research internships at UC Davis this summer under a new program supported by the Consulate General of Mexico in Sacramento.

The program will add an additional place each to the existing Research Experience for Undergraduates programs in the Departments of Mathematics and Physics. The REU program is sponsored by the National Science Foundation, but NSF rules allow non-citizens to be added to the program if other funds are used, said Manuel Calderón de la Barca Sánchez, associate professor of physics at UC Davis.

Calderón organized the new internship program with Jesus de Loera, professor of mathematics, who like Calderón is from Mexico. The professors came up with the idea after meeting the Consul, Carlos González Gutiérrez, at a campus event intended to promote ties between U.S. and Mexican universities.

“I thought about a summer research internship because I was a beneficiary of one such opportunity when I was in college in Mexico, and it made a huge difference in my career,” Calderón said.

At their recent meeting in Mexico, President Obama and President Peña Nieto pledged to increase student exchanges between the two countries.

If successful, the program will continue next year, Calderón said. In addition to the consulate, the internship program is being supported by the U.S. Embassy in Mexico, and two non-profit organizations, the Cien Amigos (100 Friends) which promotes links between California and Mexico, and MATLAC, which develops projects based on the talents of Mexicans living abroad.

Information in Spanish: http://www.redtalentossacramento.org/

Iron-platinum alloys could be new generation hard drives

Meeting the demand for more data storage in smaller volumes means using materials made up of ever-smaller magnets, or nanomagnets. One promising material for a potential new generation of recording media is an alloy of iron and platinum with an ordered crystal structure. Researchers led by Professor Kai Liu and graduate student Dustin Gilbert at the UC Davis Department of Physics have now found a convenient way to make these alloys and tailor their properties.

“The relatively convenient synthesis conditions, along with the tunable magnetic properties, make these materials highly desirable for future magnetic recording technologies,” Liu said. The iron/platinum alloy has the ability to retain information even at extremely small nanomagnet sizes, and it is resistant to heat effects.

Previous methods for making the ordered iron-platinum alloys involved high temperature treatments that would be difficult to integrate into the rest of the manufacturing process, Liu said.

Atomic force microscopy shows how adding copper (Cu) to the allow affects the structure.

Atomic force microscopy shows how adding copper (Cu) to the allow affects the structure.

The researchers, including Liang-Wei Wang and Chih-Huang Lai, National Tsing Hua University, Taiwan; and Timothy Klemmer and Jan-Ulrich Thiele, Seagate Technologies, Fremont, Calif. used a method called atomic-scale multilayer sputtering to create a material with extremely thin layers of metal, and rapid thermal annealing to convert it into the desirable ordered alloy. They could adjust the magnetic properties of the alloy by adding small amounts of copper into particular regions of the alloy.

A paper describing the work was recently published in the journal Applied Physics Letters and featured in its Research Highlights. The work was supported by the National Science Foundation Materials World Network Program.

UC Davis geneticist appointed HHMI Investigator, remembers Simon Chan

UC Davis geneticist Neil Hunter, who studies how genes are shuffled and passed to the next generation, is one of 27 new Howard Hughes Medical Institute Investigators announced today.

Hunter studies the process of homologous recombination in meiosis, the process cells use to make gametes (sperm and eggs). It’s crucial to ensure that each gamete gets the right number of chromosomes, or the pregnancy will miscarry or result in birth defects.

Our full news release is available here.

As an HHMI Investigator, Hunter will continue to work at UC Davis and devote some of his time to teaching and service as a faculty member, but he is technically employed by the HHMI which will fund his salary, research staff and lab for the next five years with the option of renewal. The HHMI’s intent is to fund “people, not projects” giving them as much freedom and flexibility as possible to follow their ideas.

Hunter was previously an HHMI Early Career Scientist, appointed in 2009. Two other UC Davis faculty, plant biologists, Jorge Dubcovsky, professor of plant sciences, and the late Simon Chan, Department of Plant Biology, were among the first-ever class of HHMI-GBMF Investigators, funded jointly by the Howard Hughes Medical Institute and the Gordon and Betty Moore Foundation to support research leading to improved crops.

Hunter said he is grateful to his colleagues in the college and former and present deans Ken Burtis and James Hildreth, department chairs Doug Nelson and Wolf-Dietrich Heyer for their support.

And he also took time to remember Simon Chan.

“This award immediately brought to my mind memories of my UC Davis and HHMI colleague, Simon Chan,” Hunter said. “His loss will be felt for a very long time, but his singular character and spirit will continue to buoy and spur us on.”

Humboldt Award for work on past and future climate change

Professor Howard Spero, chair of the Department of Geology, has received a Humboldt research award from the German government. Spero will use the award of 60,000 Euros (about $78,000) towards a sabbatical in Germany next academic year.

Spero studies changes in past climate and ocean circulation based on chemical traces in the fossil shells of tiny marine organisms called foraminifera, or “forams.” When they die, forams settle to the ocean bottom and accumulate in layers of sediment, creating a record of past ocean conditions.

Spero has carried out lab experiments with modern foraminifera to check how the properties of their shells relate to conditions of salinity, temperature and acidity. This has allowed his team to reconstruct past ocean and climate conditions from the fossil record.

During his sabbatical, Spero plans to work with colleagues at the Alfred Wegener Institute for Polar and Marine Research in Bremerhaven, Germany on developing new geochemical tools to extract novel information from these sediment cores. The ultimate aim is to link studies of climate change in the past with predictions of climate change in a future with higher levels of CO2.

Spero talks about his work in this 2011 video produced for Dutch television.

The award was conferred during a ceremony in Bamberg, Germany March 15. Spero is one of 26 UC Davis faculty to have received a Humboldt award, including Chancellor Linda P. B. Katehi.

 

Old is new: Inaugural symposium for Department of Microbiology and Molecular Genetics

The Department of Microbiology and Molecular Genetics is holding a symposium next Tuesday, May 7, to mark its recent name change. Headline speakers are David Botstein, Anthony B. Evnin professor of genomics and director of the Lewis-Sigler Institute at Princeton University, who will speak on “Yeast, evolution and cancer;” and Jillian Banfield, professor of earth and planetary sciences at UC Berkeley and the Lawrence Berkeley National Laboratory, who will talk about “Extraordinary phylogenetic diversity and ultrastructural novelty in subsurface bacteria.”

Jillian Banfield (UC Berkeley photo)

Jillian Banfield (UC Berkeley photo)

Also speaking will be several department faculty, including John Roth, Neil Hunter, Stephen Kowalczykowski and Scott Dawson. The symposium will be held in the Multipurpose Room of the Student Community Center and runs from 1 p.m. to 6.30 p.m.

Botstein will also give a special seminar on May 7, at 10 a.m. in 1022 Life Sciences building, on “Coordination of growth rate, stress response and metabolic activity in yeast.

In January this year, the Department of Microbiology in the College of Biological Sciences officially became the Department of Microbiology and Molecular Genetics. The new name better reflects what the research activities of the department, while reflecting its history, said department chair Wolf-Dietrich Heyer.

David Botstein (Credit: Frank Wojciechowski)

David Botstein (Credit: Frank Wojciechowski)

“The department has a breadth of interests that goes beyond microbiology,” Heyer said, citing for example work on telomeres, DNA repair and gene transcription, as well as on interactions between microbes and the environment. Yet all these research areas originally grew out of microbiology, and microbes such as yeast and Salmonella or E. coli bacteria are routinely used as model systems.

The symposium is jointly supported by the Storer Life Sciences Endowment of the College of Biological Sciences and by the Department of Microbiology and Molecular Genetics.

Alumn judges the Big Brains on TV

UC Davis multi-alumna Christine Gulbranson is bringing her talents to a new challenge starting today, May 1: She is one of two regular judges on a new reality TV show, “Big Brain Theory: Pure Genius” which begins an eight-week run on the Discovery Channel tonight.

Gulbranson said she hopes the show can help get young people excited about in careers in science, technology, engineering and math.

“In my experience, it was when I was working in a physics lab, doing things, that a lightbulb clicked on and I realized, ‘I can do this,’” she said.

“STEM is the core of American ingenuity. If we get kids to see that they can build something, that it is fun, sexy, and attainable, we can get them excited about it, and that’s what we need for our economic engine.”

Christine Gulbranson on the set of Big Brain Theory. Discovery Channel courtesy photo.

Christine Gulbranson on the set of Big Brain Theory. Discovery Channel courtesy photo.

Each week, the 10 contestants work in teams  to solve a tricky engineering challenge. In the first episode, they have to come up with a way to stop explosives from detonating in a pair of colliding trucks. Later challenges include building a robot that can compete in athletic events and building a portable bunker to resist fire, storm and flood.

Gulbranson holds five degrees from UC Davis: a bachelor’s degree in physics; a bachelor’s, a master’s and a Ph.D. in chemical engineering and materials science; and a MBA. She currently runs her own consulting firm, advising businesses, governments and startups especially in the areas of clean technology and renewable energy, “with a bit of nanotechnology sprinkled in,” she says.

Gulbranson said that judging the show drew on her educational background.

“There’s a lot of physics and a lot of mechanical engineering involved in these challenges and I definitely drew on that,” she said. “And of course my MBA, because a lot of it is about team dynamics, how they work together.”

“As a venture capitalist, you judge not just technology but people on a daily basis,” Gulbranson said.

Team dynamics are especially complicated in Big Brain Theory because of the way the show works. In most reality shows losing contestants leave the show each week. In Big Brain Theory, the contestants — who lived and worked together in near-isolation throughout the filming — remained on the show to help their teams, even after they were eliminated from winning the $50,000 prize.

It’s Gulbranson’s first experience with television, but not as a judge. She has previously acted as judge the Harvard Innovation Challenge, the Arab Technology Business Plan Competition and MIT’s Clean Energy Prize, among others.

Appearing as a guest judge in one episode is another UC Davis alumn, NASA engineer Adam Steltzner.

More about Christine Gulbranson on her web site: christinegulbranson.com

Video: Extended trailer

 

Robots teaching math: C-STEM Day and one-day conference

Two upcoming events showcase how teachers can bring robots into the classroom to help teach algebra, math and science and get kids fired up about careers in Science, Technology, Engineering and Math.

C-STEM Day, May 4 — Middle and high school students from across the region will test their skills in math, robotics and programming May 4 at the third annual C-STEM Day, organized by the Center for Integrated Computing and STEM Education at the University of California, Davis.

More than 70 teams from the greater Sacramento region have signed up to take part in the Roboplay Challenge, Roboplay Video and Math Programming competitions, said Harry Cheng, professor of mechanical and aerospace engineering at UC Davis and director of the C-STEM Center.

RoboPlay competitions are open-ended design challenges that integrate computer programming and math with elements of writing, art, music, choreography, design and filmmaking. Students in the Roboplay competitions work with the Mobot modular robot manufactured by Barobo, Inc. The team can also make their own robot and accessories using a 3D printer.

In the Roboplay Challenge Competition, the teams have to program their robots to achieve a particular task, such as using a robot to retrieve an item at a space station.

“It’s designed to test their real-world problem solving skills in a competitive environment, the challenge tasks are assigned on the day of competition. The team members have to solve the problems with modular robots on their own within the time constraints.” Cheng said.

In the Roboplay Video competition, teams have to produce a unique, creative video showcasing their robots.

C-STEM Day will be held at the UC Davis Conference Center, beginning at 8.30 A.M. and ending with an awards ceremony at 4 P.M.. The event is free and open to the public.

Watch: Video from last year’s C-STEM Day.

Conference on robotics in teaching, May 18 — The Center will also hold the Third Annual Conference on Integrated Computing and STEM Education on May 18. The keynote speaker will be UC Davis Provost and Executive Vice Chancellor Ralph Hexter, who will speak on the role of a land-grant research university in K-12 STEM education and outreach.

Other plenary speakers include Debra Richardson, professor of informatics at UC Irvine and former Dean of the School of Information and Computer Sciences at UC Irvine; and Jonathan Raymond, Superintendent of Sacramento City Unified School District (SCUSD). There will also be a plenary panel discussion with principals and math, science and engineering teachers from SCUSD, talking about their experience on integrating computing and STEM education with computer programming in C/C++ from seventh to 12th grade.

Breakout sessions will include speakers from regional school districts, UC Davis and the California Department of Education, addressing integrating algebra education with computer science, technology and engineering; closing the achievement gap for underrepresented groups; and integrated computing and STEM education for after-school programs.

Among those taking part will be: Karen Shores, STEM Administrator, California Department of Education; Deputy Director Michael Hardwick of Sandia National Laboratories; Winfred Robinson, superintendent of the Davis Joint Unified School District; Aida Buelna, superintendent of the Esparto Unified School District; and David Butler, CEO of NextEd, a nonprofit organization that works to develop partnerships to enhance the academic performance and career readiness of students in the Sacramento region.

The C-STEM Center also offers summer professional development programs and fellowships for STEM teachers to get experience in computing and robotics research that can be applied in their teaching.

Both C-STEM Day and the conference are sponsored by the National Science Foundation, the UC Davis College of Engineering, Sandia National Laboratories, and industrial partners.

Registration for the one-day conference costs $30 and closes May 14 ($25 before May 2). More information about the conference is available here: http://c-stem.ucdavis.edu/activities/conference/index.php

Registration: http://cstemconference.eventbrite.com/

C-STEM Day: http://c-stem.ucdavis.edu/activities/c-stem_day/

RoboPlay Competitions: http://c-stem.ucdavis.edu/roboplay/

Rocket team flies high in Alabama

The UC Davis SpaceED rocket team has returned from the NASA Student Launch Projects competition in Huntsville, Alabama. They didn’t bring back prizes on their first trip to the competition — but they did bring back some great experiences, despite a few obstacles. Here’s a report from team coordinator Daniel Berman.

Watch a video of the launch on the team’s Facebook page.

***

We were pleased with our experience in Alabama. Getting there proved to be quite the challenge with our flights from Chicago being cancelled and having to spend a night in Houston. When we did finally arrive we had missed the introductory meetings and United lost our baggage that contained our payload electronics for about a day.

These setbacks aside however, Alabama was a great experience. Although we were very pleased with the way our rocket turned out, seeing the capabilities of the schools who have well established USLI teams gave us many ideas and inspiration for the future. Both on the SLI (high school rocket competition) and USLI (university rocket competition) side, teams came with a wide range of creative features and payloads including various energy management/airbrake systems. We saw teams with interesting payloads such as the study of the effects of acceleration on capsaicin (the chemical that makes chilli peppers hot), and models designed to study methods of controlling fluid slosh in micro gravity environments.

UC Davis SpaceED rocket team preparing to launch, April 21

UC Davis SpaceED rocket team preparing to launch, April 21

Due to weather conditions our launch was postponed until Sunday, April 21. This made things a bit more difficult for our team since we had to catch an early flight back to California and therefore didn’t have as much time as we would’ve liked to prepare for our launch. Regardless, our rocket was the first launch of the day and had a picture perfect flight and successful recovery (video posted on our Facebook page). Unfortunately, our final altitude turned out higher than our simulations predicted (5670 feet versus our goal of 5280 feet)  thus technically invalidating our flight per the NASA rulebook (cannot exceed 5600 feet).

For a first year team however, and especially with all difficulty we faced just making it to competition, we were happy just to successfully arrive and launch. The entire competition was a huge learning experiences for everyone involved and I am confident UC Davis will be continue to have a presence within high powered rocketry for years to come.

For next year it is not yet clear whether the team will continue with this particular NASA competition or pursue other rocketry opportunities. Although NASA USLI has been a great learning experience there seems to be other opportunities that are both closer to home and offer the potential for more impressive challenges. Preliminary discussion has begun about the possibility of building a rocket that can travel to 100,000 feet (high enough to see ‘black sky’ and the curvature of the earth). These are the decisions the team will be making in the coming weeks/months and at this point it is too early to say exactly what the next step for the team will be.

The team still has one more report to present to NASA before the final completion of the competition. This report, due in early May, will summarize our experience, lessons learned, and most importantly analyze the data collected by our payload system.

Finally the team would like to thank Dr. Susan Ustin and the California Space Grant Consortium for generously funding our travel expenses. Without this support we could have not afforded to bring many of our most important members to competition.

Balancing act: How UC Davis contributes to nation’s largest marine protected area network

UC Davis researchers want to understand how fish benefit from Marine Protected Areas. Credit: Rennet Stowe (via Flickr)

UC Davis researchers study how fish benefit from Marine Protected Areas. Credit: Rennet Stowe (via Flickr)

If one were to set aside an area of the ocean that was off limits for fishing, how would that affect the population of, say, abalone, rockfish or some other fish species? How much catch would be lost or gained if certain areas were closed to fishing? And is there a way to balance conservation goals with the economic benefits or losses?

These were the sorts of questions UC Davis professor Louis Botsford and former UC Davis postdoc J. Wilson White sought to answer as they developed new mathematical models to calculate the expected consequences — both to marine life and to the economy — of proposed marine protected areas in California.

They were two of several scientists from a variety of institutions and agencies whose expertise helped inform the California Fish and Game Commission in its completion this past December of the nation’s first statewide coastal system of marine protected areas (MPAs).

Twelve years in the making, the network of marine parks became the largest expansion of California marine sanctuaries in 20 years. Its creation fulfilled a mandate from the state’s 1999 Marine Life Protection Act.

The new network of 124 designated areas guarantees that 16 percent of state waters (848 square miles) are permanently protected, 9 percent of which are “no-take” areas that are off limits to fishing. The previous MPA network covered just 2.7 percent of state waters, with less than 0.25 percent designated as no-take areas.

Overhauling California’s marine protected area network was a long, contentious, at times emotional, and complex process that involved multiple stakeholders, managing agencies, scientists and members of the public. Lessons learned from the process are highlighted in a March special issue of the journal Ocean and Coastal Management, recently made available for free download at the journal website. The nine articles include a paper by White and co-author Botsford, and were written by members of the MLPA Initiative, a public-private partnership established to help California implement the Marine Life Protection Act.

“The UC Davis contribution was a way of synthesizing what we know about marine biology and what we know about economics into a single framework to show the tradeoff between achieving conservation goals and economic goals,” said White, now an assistant professor of biology and marine biology at the University of North Carolina at Wilmington.

Past MPAs were designed to meet biological and ecological objectives, with economic effects typically evaluated only after MPAs have been established, the paper said.

“It’s always a balancing act,” said Botsford, from the UC Davis Department of Wildlife, Fish and Conservation Biology. “You want to get a high yield out of the fishery, yet you want the fishery to continue to be sustained. Those two things are often working at cross-purposes, and you have to decide the balance. I don’t think the new network of marine protected areas went inordinately in an unbalanced direction.”

Monitoring is currently underway to see how species are responding to the newly implemented network. Botsford, White and UC Davis Environmental Science and Policy professors Alan Hastings and Marissa Baskett are currently determining how best to detect the responses, and how long that will take.

“Over the next 10 years or so, we will see what the consequences of these marine protected areas are,” Botsford said. “Presumably, we’ll continue to manage them and change the configurations of them if that needs to be done.”

Contributed by Kat Kerlin, University Communications