Steps Towards Making a Hydrogen Fuel Enzyme

Science generally gets reported as if it happens in big leaps, but in reality most of the time science progresses in small but satisfying steps. One example of this is another step in a story I have followed for several years from Professor David Britt’s lab in the UC Davis Department of Chemistry, published April 9 in the journal Nature Chemistry.

David Britt’s laboratory at the UC Davis Department of Chemistry uses advance techniques to study how enzymes that can produce hydrogen are assembled.

With Giant Lens, Astronomers Find a Single Star Across Half the Universe

Through a lucky quirk of nature, astronomers have used the Hubble Space Telescope to view a single star halfway across the universe. Nine billion light years from Earth, the giant blue-white star, nicknamed “Icarus” by the team, is by far the most distant individual star ever seen.

Distant star image

Icarus is the farthest individual star ever seen. It is only visible because it is magnified by the gravity of a massive galaxy cluster, located about 5 billion light-years from Earth. The panels at right show the view in 2011, without Icarus visible, and the star’s brightening in 2016. (Hubble/STScI)

Italian Dark Matter Experiment Completes Run, Sets Stage for Next Experiment

The DarkSide-50 experiment at the Gran Sasso National Laboratory in Italy has completed its experimental run, the research collaboration announced today (Feb. 21). The experiment did not find any potential dark matter particles, but it did demonstrate that the technology could reject “false positive” signals from natural radioactivity or other sources. That will give researchers more confidence in data from the next, larger experiment, DarkSide-20k.

Dark Matter detector

Schematic of the DarkSide-50 detector. The cylinder is filled with liquid argon, which gives off a flash of light when a particle enters the chamber. This light is detected by photomultiplier tubes at top and bottom. (DarkSide-50 collaboration)

Synchrony in Ecology: What Magnets Have To Do With Pistachios

By Kat Kerlin

Did you ever pass an orchard with branches bursting with flowers and wonder how the trees “know” when to blossom or bear fruit all at the same time? Or perhaps you’ve walked through the woods, crunching loads of acorns underfoot one year but almost none the next year.

Pistachios

A new study shows why pistachio trees are like magnets, mathematically speaking.

Scientists from the University of California, Davis, have given such synchronicity considerable thought. In 2015, they developed a computer model showing that one of the most famous models in statistical physics, the Ising model, could be used to understand why events occur at the same time over long distances.

SuperBlueBloodMoon: New Ideas About Lunar Formation

January 31 will be an early morning show for Moon lovers. Starting about 2.51 a.m. Pacific Time will be a lunar eclipse, or “blood moon” as the Moon passes through Earth’s shadow and picks up a reddish tint. At the same time, the full Moon of Jan. 31 is also a “supermoon” when the Moon is relatively close to Earth and looks bigger and brighter, and a “blue Moon” because it is the second full Moon in one month.

NASA is calling it a “SuperBlueBloodMoon.” (If it’s cloudy where you are, NASA is also running a live stream of the eclipse.)

Looking for New Pollutants in the Ashes of Sonoma

In this month’s episode of Three Minute Egghead, UC Davis graduate student Gabrielle Black talks about collecting samples of ash from neighborhoods burned by last year’s northern California wildfires. The intense heat on a wide range of household items from insulation to electronics may have created new chemical pollutants. Thanks to modern analytic technology, Black plans to search for both known pollutants and new compounds, and compare them to the ashes of burned wild land.

Listen to the podcast here.

More information

Testing Sonoma Ash and Air for Fire-Formed Pollutants

WHAT-NOW Survey (UC Davis Environmental Health Sciences Center)

Plants by the Numbers: Math, Computation and the Future of Plant Biology

by Greg Watry

What does the future of plant biology education and research look like? That’s the question on the mind of Siobhan Brady, associate professor of plant biology at UC Davis.

Big data approaches will be key to advances in plant biology, so students need to be trained in these areas. Unknown author/Wikipedia (CC BY 2.5)

In a Plant Physiology commentary paper, Brady, along with 37 other plant biologists from around the world, call for universities to integrate more quantitative and computational techniques into biology-oriented academic curricula. Introducing these skills early, the group advises, will help prepare tomorrow’s plant biologists for the next era of genomics research.

Where Things Go Wrong: Perspective on Cascading Failures

By Aditi Risbud Bartl

Sometimes, one darn thing leads to another in a series of cascading failures. Understanding the weak points that lead to such cascades could help us make better investments in preventing them.

Professor Raissa D’Souza in the UC Davis College of Engineering studies complex systems and how they can go wrong.

In the Nov. 17 issue of Science, Raissa D’Souza, professor of computer science and mechanical and aerospace engineering at UC Davis, wrote a perspective article about cascading failures that arise from the reorganization of flows on a network, such as in electric power grids, supply chains and transportation networks.

New X-ray Spectroscopy Explores Hydrogen-generating Catalyst

Using a newly developed technique, researchers from Japan, Germany and the U.S. have identified a key step in production of hydrogen gas by a bacterial enzyme. Understanding these reactions could be important in developing a clean-fuel economy powered by hydrogen.

The single-celled green alga Chlamydomonas reinhardtii has an iron-based enzyme that can generate hydrogen gas. (JGI)

The team studied hydrogenases – enzymes that catalyze production of hydrogen from two widely distributed organisms: Chlamydomonas reinhardtii, a single-cell algae and Desulfovibrio desulfuricans, a bacterium.

In both cases, their hydrogenase enzymes have an active site with two iron atoms.

Podcast: Knots, Math and Reconnection in DNA

If you’ve ever tried to untangle a pair of earbuds, you’ll understand how loops and cords can get twisted up. DNA can get tangled in the same way. In this episode of Three Minute Egghead, UC Davis biomathematician Mariel Vazquez talks about her work on the math of how DNA can be cut and reconnected. The math involved turns out to be involved in other fields as well — from fluid dynamics to solar flares.

https://soundcloud.com/andy-fell/knots-math-and-reconnection-in-dna

For more podcast episodes, subscribe to Three Minute Egghead on iTunes or follow us on Soundcloud.